Development, testing and performance benchmarks; contact information;
plans for a major revision of yammp.
Yammp is available for SGI workstations. Download the programs,
installation instructions, and documentation in electronic format;
Complete documentation to the programs, description of the file formats
and the command language
Tutorials are being developed, introduction to molecular simulations,
Discusses simulation methods and how they are implemented; the power
series force field terms; programming new force field terms and
This software package is now obsolete. You
can request a copy of Yammp 1 and use it. (Write to to the address
below, see the electronic form for the information that we need but
electronic submissions are not accepted. A valid email address is
required, the link will be emailed to you.) You are encouraged to
to YUP or Yammp 2. If you have been using VLAT, please
switch to Yup.vlat or better still, Yup.scx.
Both of the latter programs are available as part of Yammp2.
Yammp is a package for molecular simulations which has been
used for standard molecular models but the emphasis is on reduced
representation models. There are several methods for Energy
Minimization, Molecular Dynamics and Monte Carlo.
July 7, 2005: Yammp 2 or YUP is now available.
Yammp is a component of a NIH Research Resource to provide Multiscale
Modeling Tools for Structural Biology.