yammp

DEVELOPMENT
Development, testing and performance benchmarks; contact information; plans for a major revision of yammp.

DOWNLOAD
Yammp is available for SGI workstations. Download the programs, installation instructions, and documentation in electronic format; legal stuff.

MANUALS
Complete documentation to the programs, description of the file formats and the command language

TUTORIALS
Tutorials are being developed, introduction to molecular simulations, alkanes

TECHNICAL
Discusses simulation methods and how they are implemented; the power series force field terms; programming new force field terms and structure refinement
 

UPGRADE
This software package is now obsolete. You can request a copy of Yammp 1 and use it. (Write to to the address below, see the electronic form for the information that we need but electronic submissions are not accepted. A valid email address is required, the link will be emailed to you.) You are encouraged to switch to YUP or Yammp 2. If you have been using VLAT, please switch to Yup.vlat or better still, Yup.scx. Both of the latter programs are available as part of Yammp2.

OVERVIEW
Yammp is a package for molecular simulations which has been used for standard molecular models but the emphasis is on reduced representation models. There are several methods for Energy Minimization, Molecular Dynamics and Monte Carlo.

NEWS
July 7, 2005: Yammp 2 or YUP is now available.

OTHER SITES
MMTSB
Yammp is a component of a NIH Research Resource to provide Multiscale Modeling Tools for Structural Biology.

Robert Tan, School of Biology; 310 Ferst Drive; Georgia Institute of Technology; Atlanta, GA 30332-0230

THE HARVEY LABORATORY