|YUP.SCX is a method of
refining high-resolution atomic
structures to fit optimally into intermediate-resolution
maps. This is not a search procedure; the initial structure must
first be positioned approximately into
the target map. YUP.SCX makes use of the simulated annealing procedure,
a global optimization method.
This procedure is implemented in an easy-to-use program
|Citation||If you publish work that makes
use of this program, please cite:
Tan, R.K.-Z.; Devkota, B. and Harvey S.C.
YUP.SCX: Coaxing Atomic Models into Medium Resolution Electron Density Maps.
J. Struct. Biol. 163, 163-174 (2008)
The current version of
||(Link above). This is based on
the paper cited
above. The commands to carry out the calculations discussed in the
paper are listed.
||To make use of the YUP.SCX
procedure, you only need to run one program:
||This is an updated
version of the VLAT procedure (unpublished) in Yammp 1. Although Yammp
1 is still available (IRIX only), we encourage people to switch to YUP
and to use
the revised version.